Variant report

Variant	rs7642628
Chromosome Location	chr3:156128052-156128053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513487	1.00[JPT][hapmap]
rs11706548	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs11708859	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs11926141	0.94[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs11926292	0.94[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs12054022	0.83[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs12107383	0.82[JPT][hapmap]
rs13324876	0.89[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450105	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs1450106	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs1450107	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1450111	0.85[JPT][hapmap]
rs16826083	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16826108	0.89[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs17238004	0.82[JPT][hapmap]
rs17238018	0.85[JPT][hapmap]
rs17238651	0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs17309427	0.85[JPT][hapmap]
rs3755629	0.85[JPT][hapmap]
rs3755630	0.82[JPT][hapmap]
rs3772249	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3772250	0.85[JPT][hapmap]
rs3772252	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3772253	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3772254	0.85[JPT][hapmap]
rs3772255	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs3772257	0.85[JPT][hapmap]
rs3772261	0.94[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs3772262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796166	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3821417	1.00[JPT][hapmap]
rs3821419	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3821420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4989481	0.80[CEU][hapmap]
rs56872455	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441064	0.85[JPT][hapmap]
rs6790537	0.85[JPT][hapmap]
rs6801464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164745	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7613469	0.95[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs7615568	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7619720	0.95[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs7619831	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs7622423	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs7631581	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs938417	0.84[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs940050	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs9846546	0.85[JPT][hapmap]
rs9850840	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs9853634	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156123200-156135000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:156123200-156135000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:156127200-156128200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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