Variant report
Variant | rs568777781 |
---|---|
Chromosome Location | chr6:63940486-63940487 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:61)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:63940486-63940536 | MCF-7 | breast: | n/a |
2 | chr6:63940486-63940536 | SK-N-MC | brain: | n/a |
3 | chr6:63940486-63940536 | HRE | kidney: | n/a |
4 | chr6:63940486-63940536 | NHDF-neo | bronchial: | n/a |
5 | chr6:63940486-63940536 | SAEC | small airway: | n/a |
6 | chr6:63940486-63940536 | AG04449 | skin: | fetal |
7 | chr6:63940486-63940536 | H1-hESC | embryonic stem cell: | embryo |
8 | chr6:63940486-63940536 | Hela-S3 | cervix: | n/a |
9 | chr6:63940486-63940536 | NT2-D1 | testis: | n/a |
10 | chr6:63940486-63940536 | GM12878 | blood: | n/a |
11 | chr6:63940486-63940536 | GM12892 | blood: | n/a |
12 | chr6:63940486-63940536 | AG10803 | skin: | n/a |
13 | chr6:63940486-63940536 | BE2_C | brain: | n/a |
14 | chr6:63940486-63940536 | HMEC | breast: | n/a |
15 | chr6:63940486-63940536 | HCPEpiC | choroid plexus: | n/a |
16 | chr6:63940486-63940536 | AG09319 | gingival: | n/a |
17 | chr6:63940486-63940536 | HEK293 | kidney: | embryo |
18 | chr6:63940486-63940536 | SK-N-SH | brain: | n/a |
19 | chr6:63940486-63940536 | Caco-2 | colon: | n/a |
20 | chr6:63940486-63940536 | HepG2 | liver: | n/a |
21 | chr6:63940486-63940536 | NB4 | blood: | n/a |
22 | chr6:63940486-63940536 | PANC-1 | pancreas: | n/a |
23 | chr6:63940486-63940536 | GM06990 | blood: | n/a |
24 | chr6:63940486-63940536 | CMK | blood: | n/a |
25 | chr6:63940486-63940536 | HRPEpiC | eye: | n/a |
26 | chr6:63940486-63940536 | HRCEpiC | kidney: | n/a |
27 | chr6:63940486-63940536 | RPTEC | kidney: | n/a |
28 | chr6:63940486-63940536 | A549 | lung: | n/a |
29 | chr6:63940486-63940536 | HIPEpiC | eye: | n/a |
30 | chr6:63940486-63940536 | HNPCEpiC | eye: | n/a |
31 | chr6:63940486-63940536 | PFSK-1 | brain: | n/a |
32 | chr6:63940486-63940536 | HAEpiC | amniotic membrane: | n/a |
33 | chr6:63940486-63940536 | ECC-1 | luminal epithelium: | n/a |
34 | chr6:63940486-63940536 | LNCaP | prostate: | n/a |
35 | chr6:63940486-63940536 | GM19239 | blood: | n/a |
36 | chr6:63940486-63940536 | IMR90 | lung: | fetal |
37 | chr6:63940486-63940536 | HPAEpiC | pulmonary alveolar: | n/a |
38 | chr6:63940486-63940536 | PrEC | prostate: | n/a |
39 | chr6:63940486-63940536 | ovcar-3 | ovarian: | n/a |
40 | chr6:63940486-63940536 | HEEpiC | esophagus: | n/a |
41 | chr6:63940486-63940536 | HCT-116 | colon: | n/a |
42 | chr6:63940486-63940536 | AG09309 | skin: | n/a |
43 | chr6:63940486-63940536 | HCM | heart: | n/a |
44 | chr6:63940486-63940536 | MCF10A-Er-Src | breast: | n/a |
45 | chr6:63940486-63940536 | HCF | heart: | n/a |
46 | chr6:63940486-63940536 | AoSMC | blood vessel: | n/a |
47 | chr6:63940486-63940536 | HL-60 | blood: | n/a |
48 | chr6:63940486-63940536 | ProgFib | skin: | n/a |
49 | chr6:63940486-63940536 | SKMC | muscle: | n/a |
50 | chr6:63940486-63940536 | SK-N-SH_RA | brain: | n/a |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000218520 | CpG island |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1019831 | chr6:63279677-64230736 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv1025099 | chr6:63514227-64055649 | Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv538270 | chr6:63682752-64147241 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
4 | esv2758058 | chr6:63706622-63985889 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | esv2759434 | chr6:63706622-63985889 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv33308 | chr6:63919357-63956379 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | esv2762595 | chr6:63931504-63948305 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv517212 | chr6:63931621-63948305 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv970134 | chr6:63936480-63941318 | Inactive region | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
10 | nsv970133 | chr6:63936480-63950132 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |