Variant report

Variant	rs56878714
Chromosome Location	chr8:2023127-2023128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58524877	1.00[AMR][1000 genomes]
rs59224989	1.00[AMR][1000 genomes]
rs60309480	1.00[AMR][1000 genomes]
rs61401600	1.00[AMR][1000 genomes]
rs61732775	1.00[AMR][1000 genomes]
rs73538631	1.00[AMR][1000 genomes]
rs73541948	1.00[AMR][1000 genomes]
rs73548331	1.00[AMR][1000 genomes]
rs73548357	1.00[AMR][1000 genomes]
rs73549949	1.00[AMR][1000 genomes]
rs73549959	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2012000-2026000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:2018400-2025000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:2019800-2023600	Enhancers	Fetal Heart	heart
4	chr8:2021000-2023200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr8:2021600-2023600	Genic enhancers	Fetal Muscle Leg	muscle
6	chr8:2021600-2023600	Enhancers	Spleen	Spleen
7	chr8:2021800-2024000	Enhancers	Fetal Intestine Large	intestine
8	chr8:2022400-2023200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:2022600-2023200	Enhancers	Duodenum Mucosa	Duodenum
10	chr8:2022800-2023200	Enhancers	Fetal Intestine Small	intestine
11	chr8:2022800-2023200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:2022800-2023200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr8:2022800-2023400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr8:2022800-2023600	Enhancers	Colonic Mucosa	Colon
15	chr8:2022800-2023600	Enhancers	Gastric	stomach
16	chr8:2022800-2023600	Enhancers	Pancreas	Pancrea
17	chr8:2022800-2023600	Enhancers	Right Atrium	heart
18	chr8:2022800-2023600	Enhancers	HSMMtube	muscle
19	chr8:2022800-2023800	Enhancers	Primary hematopoietic stem cells	blood
20	chr8:2022800-2023800	Enhancers	Fetal Thymus	thymus
21	chr8:2022800-2024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:2022800-2024200	Enhancers	HUVEC	blood vessel
23	chr8:2022800-2024400	Enhancers	Stomach Mucosa	stomach
24	chr8:2022800-2024800	Enhancers	Left Ventricle	heart
25	chr8:2022800-2026000	Enhancers	Right Ventricle	heart
26	chr8:2023000-2023200	Enhancers	Primary T cells from cord blood	blood
27	chr8:2023000-2023200	Bivalent Enhancer	Adipose Nuclei	Adipose
28	chr8:2023000-2023200	Genic enhancers	Psoas Muscle	Psoas
29	chr8:2023000-2023200	Bivalent Enhancer	A549	lung
30	chr8:2023000-2023400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr8:2023000-2023400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr8:2023000-2023400	Enhancers	Fetal Kidney	kidney
33	chr8:2023000-2023600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr8:2023000-2023600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:2023000-2023600	Enhancers	Fetal Brain Male	brain
36	chr8:2023000-2023600	Flanking Active TSS	Fetal Lung	lung
37	chr8:2023000-2023600	Bivalent Enhancer	Placenta	Placenta
38	chr8:2023000-2023600	Enhancers	Fetal Stomach	stomach
39	chr8:2023000-2023600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr8:2023000-2023800	Flanking Active TSS	Hela-S3	cervix
41	chr8:2023000-2024000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links