Variant report

Variant	rs73548331
Chromosome Location	chr8:1975820-1975821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56878714	1.00[AMR][1000 genomes]
rs58524877	1.00[AMR][1000 genomes]
rs59224989	1.00[AMR][1000 genomes]
rs60309480	1.00[AMR][1000 genomes]
rs61401600	1.00[AMR][1000 genomes]
rs61732775	1.00[AMR][1000 genomes]
rs73538631	1.00[AMR][1000 genomes]
rs73541948	1.00[AMR][1000 genomes]
rs73548357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73549949	1.00[AMR][1000 genomes]
rs73549959	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1972000-1976400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:1972200-1977400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:1972200-1981600	Weak transcription	Spleen	Spleen
4	chr8:1972400-1977400	Weak transcription	Fetal Brain Male	brain
5	chr8:1972400-1977600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:1972400-1978600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:1972600-1977400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:1973600-1981400	Weak transcription	Right Atrium	heart
9	chr8:1973800-1976200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:1974800-1977400	Weak transcription	Fetal Kidney	kidney
11	chr8:1975000-1979400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:1975200-1983200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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