Variant report

Variant	rs56882294
Chromosome Location	chr6:72200608-72200609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72199284..72202242-chr6:72207805..72209852,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12055679	0.86[ASN][1000 genomes]
rs9341320	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72197800-72201000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:72198000-72201400	Enhancers	HSMMtube	muscle
4	chr6:72198000-72201600	Enhancers	HSMM	muscle
5	chr6:72198200-72202400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:72198400-72205200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:72199000-72201600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:72199200-72200800	Enhancers	Placenta	Placenta
9	chr6:72199400-72201000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:72199600-72205600	Weak transcription	Aorta	Aorta
11	chr6:72199800-72205000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:72200000-72205000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:72200000-72205200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:72200200-72201800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:72200200-72205200	Weak transcription	Osteobl	bone
16	chr6:72200200-72205400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:72200400-72200800	Enhancers	Psoas Muscle	Psoas
18	chr6:72200400-72205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:72200400-72205200	Weak transcription	HUVEC	blood vessel
20	chr6:72200600-72200800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:72200600-72201000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:72200600-72201000	Enhancers	Fetal Muscle Leg	muscle
23	chr6:72200600-72201800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:72200600-72205000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links