Variant report

Variant	rs9341320
Chromosome Location	chr6:72207371-72207372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10737973	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12176333	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs169213	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs199619	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56882294	0.82[ASN][1000 genomes]
rs6905108	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9341321	0.97[EUR][1000 genomes]
rs9342840	0.97[EUR][1000 genomes]
rs9350414	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351818	0.82[ASN][1000 genomes]
rs9358957	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360455	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360456	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360458	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72206200-72210000	Weak transcription	Fetal Kidney	kidney
3	chr6:72206200-72218600	Weak transcription	Aorta	Aorta
4	chr6:72206600-72209200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:72206600-72212600	Weak transcription	HSMMtube	muscle
6	chr6:72206600-72213400	Weak transcription	NHLF	lung
7	chr6:72206600-72218400	Weak transcription	Fetal Lung	lung
8	chr6:72206800-72209400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:72206800-72209400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:72206800-72209400	Weak transcription	Osteobl	bone
11	chr6:72206800-72209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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