Variant report

Variant	rs169213
Chromosome Location	chr6:72221010-72221011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10737973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176333	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs199619	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905108	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927647	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs6939711	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9341320	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9341321	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9342840	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9350414	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351818	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9358957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358964	0.84[CHB][hapmap]
rs9360455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360458	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360459	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72220000-72222200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72220200-72222000	Weak transcription	Psoas Muscle	Psoas
3	chr6:72220200-72222000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:72220200-72222200	Weak transcription	Aorta	Aorta
5	chr6:72220400-72221600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:72220400-72222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:72220600-72221200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:72220600-72222800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:72220800-72221800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:72220800-72221800	Weak transcription	HSMMtube	muscle
11	chr6:72220800-72222000	Weak transcription	HSMM	muscle
12	chr6:72220800-72222200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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