Variant report

Variant	rs9351818
Chromosome Location	chr6:72220746-72220747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10737973	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12176333	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs169213	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs199619	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6905108	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927647	0.81[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs6939711	0.89[ASN][1000 genomes]
rs9341320	0.82[ASN][1000 genomes]
rs9341321	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9342840	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9350414	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9358957	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9358964	0.83[CHB][hapmap]
rs9360455	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9360456	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9360458	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9360459	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72218400-72220800	Enhancers	Fetal Lung	lung
2	chr6:72218400-72220800	Enhancers	HSMMtube	muscle
3	chr6:72218600-72220800	Enhancers	HSMM	muscle
4	chr6:72219000-72220800	Enhancers	Fetal Kidney	kidney
5	chr6:72219600-72220800	Enhancers	HUVEC	blood vessel
6	chr6:72219800-72220800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:72220000-72222200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:72220200-72222000	Weak transcription	Psoas Muscle	Psoas
9	chr6:72220200-72222000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:72220200-72222200	Weak transcription	Aorta	Aorta
11	chr6:72220400-72220800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:72220400-72221600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:72220400-72222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:72220600-72221200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:72220600-72222800	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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