Variant report

Variant	rs6939711
Chromosome Location	chr6:72256563-72256564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10737973	0.89[ASN][1000 genomes]
rs12176333	0.85[ASN][1000 genomes]
rs169213	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs199619	0.89[ASN][1000 genomes]
rs272226	0.81[EUR][1000 genomes]
rs6905108	0.89[ASN][1000 genomes]
rs6927647	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6930606	0.82[AFR][1000 genomes]
rs6938975	0.82[AFR][1000 genomes]
rs9341321	0.94[ASN][1000 genomes]
rs9342840	0.92[ASN][1000 genomes]
rs9350414	0.88[ASN][1000 genomes]
rs9351818	0.89[ASN][1000 genomes]
rs9358957	0.89[ASN][1000 genomes]
rs9360455	0.89[ASN][1000 genomes]
rs9360456	0.89[ASN][1000 genomes]
rs9360458	0.89[ASN][1000 genomes]
rs9360459	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9360461	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72255400-72257400	Weak transcription	Osteobl	bone
2	chr6:72256200-72261600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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