Variant report

Variant	rs9360459
Chromosome Location	chr6:72253007-72253008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10737973	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12176333	0.82[AMR][1000 genomes]
rs169213	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs199619	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs272226	0.83[EUR][1000 genomes]
rs6905108	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6927647	0.90[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6939711	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9341321	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9342840	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9350414	0.82[AMR][1000 genomes]
rs9351818	0.80[ASN][1000 genomes]
rs9358957	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9360455	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9360456	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9360458	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72251400-72255600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:72251800-72255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:72252800-72253400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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