Variant report

Variant	rs56883717
Chromosome Location	chr8:10049485-10049486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10104463	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11249973	0.80[AMR][1000 genomes]
rs11777161	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11786117	0.82[AMR][1000 genomes]
rs11786120	0.82[AMR][1000 genomes]
rs11787363	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11993663	0.80[AMR][1000 genomes]
rs12548428	0.88[AMR][1000 genomes]
rs1484647	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17748464	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905633	0.83[AMR][1000 genomes]
rs1905634	0.80[ASN][1000 genomes]
rs4448276	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59255182	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60032918	0.84[AMR][1000 genomes]
rs60498378	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73191547	0.83[AMR][1000 genomes]
rs7822181	0.85[ASN][1000 genomes]
rs7842065	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10044200-10050000	Weak transcription	Fetal Brain Female	brain
2	chr8:10048200-10052200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10049000-10050200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:10049000-10051200	Enhancers	Fetal Brain Male	brain
5	chr8:10049400-10049600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:10049400-10050000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:10049400-10050000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10049400-10050600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:10049400-10050800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:10049400-10051000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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