Variant report

Variant	rs7822181
Chromosome Location	chr8:10049872-10049873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085917	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10097315	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10283047	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13257383	0.84[ASN][1000 genomes]
rs1484648	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17748464	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905633	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1905634	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2409623	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28660563	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28701812	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2898240	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56883717	0.85[ASN][1000 genomes]
rs57515357	0.80[EUR][1000 genomes]
rs60032918	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60999585	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6601420	0.80[EUR][1000 genomes]
rs6982806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6994636	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6996281	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6997464	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7004224	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7006628	0.86[ASN][1000 genomes]
rs7011004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7011281	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7011821	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7812517	0.83[AMR][1000 genomes]
rs7820236	0.81[AMR][1000 genomes]
rs7829478	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10044200-10050000	Weak transcription	Fetal Brain Female	brain
2	chr8:10048200-10052200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10049000-10050200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:10049000-10051200	Enhancers	Fetal Brain Male	brain
5	chr8:10049400-10050000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:10049400-10050000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:10049400-10050600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:10049400-10050800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:10049400-10051000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:10049600-10050200	Enhancers	NHDF-Ad	bronchial
11	chr8:10049600-10050400	Enhancers	HMEC	breast
12	chr8:10049600-10050600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:10049600-10051000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:10049800-10050000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:10049800-10050000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:10049800-10050400	Enhancers	HSMMtube	muscle
17	chr8:10049800-10050400	Enhancers	NHEK	skin
18	chr8:10049800-10050400	Enhancers	Osteobl	bone
19	chr8:10049800-10050600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:10049800-10050800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:10049800-10050800	Enhancers	Muscle Satellite Cultured Cells	--

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