Variant report

Variant	rs6601420
Chromosome Location	chr8:10045721-10045722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10085917	0.96[CEU][hapmap];0.91[CHB][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10093457	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10104463	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10283047	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11249973	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11777161	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11786117	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11786120	0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11787363	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13257383	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs13258839	0.82[ASN][1000 genomes]
rs1484648	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs17151318	0.85[CEU][hapmap]
rs17748267	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs17748464	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1905630	0.96[CEU][hapmap]
rs1905631	0.96[CEU][hapmap]
rs1905633	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905634	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2409623	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28380058	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28701812	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2898240	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4255142	0.81[JPT][hapmap]
rs4448276	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59255182	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60032918	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60498378	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6982806	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6994636	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996281	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6997464	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7006628	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7011004	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7011281	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7011821	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7820236	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7822181	0.80[EUR][1000 genomes]
rs7829478	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7842065	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10042800-10049400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:10043400-10046600	Enhancers	Fetal Brain Male	brain
3	chr8:10043800-10046400	Weak transcription	Aorta	Aorta
4	chr8:10044200-10050000	Weak transcription	Fetal Brain Female	brain
5	chr8:10044400-10048000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:10044800-10045800	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:10045600-10046400	Weak transcription	Liver	Liver

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