Variant report

Variant	rs1905630
Chromosome Location	chr8:10033264-10033265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10085917	0.93[CEU][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10097315	0.90[JPT][hapmap]
rs10104463	0.92[CEU][hapmap]
rs11249972	0.82[AMR][1000 genomes]
rs11249973	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs11783143	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs11786117	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs11786120	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs11993663	0.85[CHB][hapmap]
rs13257383	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs13258839	0.84[ASN][1000 genomes]
rs1484648	0.89[CEU][hapmap]
rs17151318	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs17748267	0.81[CEU][hapmap]
rs17748464	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs1905631	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1905632	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905634	0.89[CEU][hapmap];0.80[JPT][hapmap]
rs28380058	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28448513	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28570266	0.85[AMR][1000 genomes]
rs2898240	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3958939	0.90[ASN][1000 genomes]
rs4448276	0.96[CEU][hapmap]
rs60999585	0.82[AMR][1000 genomes]
rs6601419	0.81[CHB][hapmap]
rs6601420	0.96[CEU][hapmap]
rs6981758	0.82[JPT][hapmap]
rs6982806	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs6997464	0.96[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs7006628	0.96[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7011004	0.92[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7011281	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7011821	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7812517	0.85[JPT][hapmap]
rs7820236	0.93[CEU][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap]
rs7829478	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs7845503	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1905630	FLJ10661	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10028200-10039000	Enhancers	Fetal Brain Male	brain
3	chr8:10029200-10034200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:10029600-10034400	Enhancers	Fetal Brain Female	brain
5	chr8:10031000-10033800	Weak transcription	Brain Substantia Nigra	brain
6	chr8:10031400-10033800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:10031600-10036800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:10031600-10040600	Weak transcription	Brain Germinal Matrix	brain
9	chr8:10032000-10034000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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