Variant report

Variant	rs3958939
Chromosome Location	chr8:10027482-10027483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13257383	0.84[ASN][1000 genomes]
rs13258839	0.81[ASN][1000 genomes]
rs1905630	0.90[ASN][1000 genomes]
rs1905631	0.82[ASN][1000 genomes]
rs1905632	0.91[ASN][1000 genomes]
rs28380058	0.82[ASN][1000 genomes]
rs28448513	0.92[ASN][1000 genomes]
rs4255142	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7006628	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10021400-10029600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10025000-10029200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:10025000-10030000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:10025200-10031200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:10025400-10030200	Weak transcription	Brain Substantia Nigra	brain
7	chr8:10025400-10030800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:10025600-10027600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:10025600-10029600	Weak transcription	Fetal Brain Female	brain
10	chr8:10025600-10030800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10026000-10030000	Weak transcription	Brain Germinal Matrix	brain
12	chr8:10026200-10027800	Enhancers	Duodenum Mucosa	Duodenum
13	chr8:10026400-10030200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:10026400-10030600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:10026400-10030800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:10026400-10030800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:10026600-10030600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:10027000-10028200	Weak transcription	Fetal Brain Male	brain
19	chr8:10027200-10029600	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:10027400-10028800	Enhancers	Fetal Intestine Small	intestine
21	chr8:10027400-10029600	Enhancers	Fetal Intestine Large	intestine

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