Variant report

Variant	rs4255142
Chromosome Location	chr8:10024748-10024749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085917	0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10097315	0.80[CHD][hapmap]
rs11249973	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11777161	0.82[ASN][1000 genomes]
rs11783143	0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs11786117	0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11786120	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11787363	0.80[ASN][1000 genomes]
rs11993663	0.82[CHD][hapmap]
rs13257383	0.82[JPT][hapmap]
rs13258839	0.90[ASN][1000 genomes]
rs1484646	0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs1484648	0.82[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs17748267	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1905631	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2046397	0.91[CHB][hapmap];0.80[CHD][hapmap];0.83[ASN][1000 genomes]
rs28380058	0.90[ASN][1000 genomes]
rs36126674	0.85[EUR][1000 genomes]
rs3958939	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59255182	0.80[ASN][1000 genomes]
rs6601420	0.81[JPT][hapmap]
rs6994808	0.83[ASN][1000 genomes]
rs6996281	0.81[ASN][1000 genomes]
rs6997464	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7006628	0.82[JPT][hapmap]
rs7007046	0.84[ASN][1000 genomes]
rs7011004	0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7011281	0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7011821	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7017212	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs7820236	0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10003400-10026600	Weak transcription	Liver	Liver
3	chr8:10016200-10026000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:10017000-10025000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr8:10019000-10025800	Weak transcription	Fetal Intestine Small	intestine
6	chr8:10020000-10025800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:10021000-10025600	Enhancers	Fetal Brain Male	brain
8	chr8:10021400-10029600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10023400-10025000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:10023600-10025600	Enhancers	Fetal Brain Female	brain
11	chr8:10023800-10025200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:10023800-10025600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:10024000-10025200	Enhancers	Brain Angular Gyrus	brain
14	chr8:10024000-10025400	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:10024000-10025600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:10024000-10026000	Enhancers	Brain Germinal Matrix	brain
17	chr8:10024200-10025400	Enhancers	Brain Substantia Nigra	brain
18	chr8:10024400-10025200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:10024400-10025400	Enhancers	Brain Hippocampus Middle	brain
20	chr8:10024600-10024800	Enhancers	Brain Anterior Caudate	brain
21	chr8:10024600-10025600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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