Variant report

Variant	rs2898240
Chromosome Location	chr8:10046960-10046961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9911097..9912602-chr8:10046216..10048538,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260093	Chromatin interaction
ENSG00000175806	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10085917	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10093457	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10097315	0.81[AMR][1000 genomes]
rs10104463	0.83[ASN][1000 genomes]
rs10283047	0.83[ASN][1000 genomes]
rs11249972	0.80[AMR][1000 genomes]
rs11249973	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11777161	0.81[ASN][1000 genomes]
rs11786117	0.81[ASN][1000 genomes]
rs11786120	0.81[ASN][1000 genomes]
rs13257383	0.90[ASN][1000 genomes]
rs1484648	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1905630	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1905631	0.81[EUR][1000 genomes]
rs1905632	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1905633	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905634	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2409623	0.83[AMR][1000 genomes]
rs28448513	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28660563	0.80[AMR][1000 genomes]
rs60999585	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6601420	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6982806	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6994636	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6996281	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6997464	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7004224	0.82[AMR][1000 genomes]
rs7006628	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011004	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011281	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7011821	0.86[EUR][1000 genomes]
rs7820236	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7822181	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7829478	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7842065	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10042800-10049400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:10044200-10050000	Weak transcription	Fetal Brain Female	brain
3	chr8:10044400-10048000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:10046600-10049000	Weak transcription	Fetal Brain Male	brain

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