Variant report

Variant	rs56887788
Chromosome Location	chr1:153376573-153376574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11205244	1.00[AMR][1000 genomes]
rs11205245	1.00[AMR][1000 genomes]
rs11205249	1.00[AMR][1000 genomes]
rs11205253	1.00[AMR][1000 genomes]
rs12057152	1.00[AMR][1000 genomes]
rs12097501	1.00[AMR][1000 genomes]
rs16835107	1.00[AMR][1000 genomes]
rs1928343	1.00[AMR][1000 genomes]
rs56396853	0.88[AFR][1000 genomes]
rs57544274	0.83[AFR][1000 genomes]
rs60217011	0.87[AFR][1000 genomes]
rs73012548	1.00[AMR][1000 genomes]
rs73012557	1.00[AMR][1000 genomes]
rs732700	1.00[AMR][1000 genomes]
rs74115413	0.80[AFR][1000 genomes]
rs74115416	0.83[AFR][1000 genomes]
rs74115420	0.83[AFR][1000 genomes]
rs74115426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153368600-153377600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:153374600-153377600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr1:153375200-153376800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:153376000-153377000	Enhancers	Primary B cells from cord blood	blood
5	chr1:153376000-153377400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:153376400-153376600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr1:153376400-153376600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:153376400-153376800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr1:153376400-153377000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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