Variant report

Variant	rs11205245
Chromosome Location	chr1:153215024-153215025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:153211248..153213332-chr1:153213671..153216662,2	MCF-7	breast:
2	chr1:153213411..153215461-chr1:153315506..153317506,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11205244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11205249	1.00[AMR][1000 genomes]
rs11205253	1.00[AMR][1000 genomes]
rs12057152	1.00[AMR][1000 genomes]
rs12071483	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12071715	1.00[EUR][1000 genomes]
rs12097501	1.00[AMR][1000 genomes]
rs1500936	1.00[EUR][1000 genomes]
rs16834990	1.00[EUR][1000 genomes]
rs16835050	1.00[TSI][hapmap]
rs16835107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1928343	1.00[AMR][1000 genomes]
rs2233863	1.00[TSI][hapmap]
rs3006417	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3006418	1.00[EUR][1000 genomes]
rs3006419	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3006474	1.00[EUR][1000 genomes]
rs3014820	1.00[EUR][1000 genomes]
rs3014821	1.00[EUR][1000 genomes]
rs3014877	1.00[EUR][1000 genomes]
rs3014882	1.00[EUR][1000 genomes]
rs4110996	1.00[EUR][1000 genomes]
rs55900893	1.00[EUR][1000 genomes]
rs55955219	1.00[EUR][1000 genomes]
rs56887788	1.00[AMR][1000 genomes]
rs60921957	1.00[EUR][1000 genomes]
rs61555689	1.00[EUR][1000 genomes]
rs6693273	1.00[EUR][1000 genomes]
rs73012548	1.00[AMR][1000 genomes]
rs73012557	1.00[AMR][1000 genomes]
rs73018429	1.00[EUR][1000 genomes]
rs732700	1.00[AMR][1000 genomes]
rs74115426	1.00[AMR][1000 genomes]
rs74133619	1.00[EUR][1000 genomes]
rs74133622	1.00[EUR][1000 genomes]
rs74133623	1.00[EUR][1000 genomes]
rs74136421	1.00[EUR][1000 genomes]
rs7513811	1.00[EUR][1000 genomes]
rs7522548	1.00[EUR][1000 genomes]
rs7537448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
6	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
7	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv1004168	chr1:153088209-153226033	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1013041	chr1:153105260-153223716	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1003014	chr1:153209833-153263691	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv535172	chr1:153209833-153263691	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv998032	chr1:153210770-153264131	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3453082	chr1:153213928-153219526	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv3453083	chr1:153213928-153219526	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153205200-153215600	Weak transcription	Spleen	Spleen
2	chr1:153210200-153215600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:153211400-153221200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:153214400-153217800	Weak transcription	Right Atrium	heart
5	chr1:153215000-153217800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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