Variant report
| Variant | rs3014820 |
|---|---|
| Chromosome Location | chr1:153396315-153396316 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:153394465..153398536-chr1:153398736..153402872,4 | K562 | blood: | |
| 2 | chr1:153336266..153339215-chr1:153393724..153396569,2 | MCF-7 | breast: | |
| 3 | chr1:153328062..153332683-chr1:153391986..153396488,5 | MCF-7 | breast: | |
| 4 | chr1:153395396..153398513-chr1:153399478..153403187,3 | MCF-7 | breast: | |
| 5 | chr1:153395818..153398608-chr1:153432369..153434096,2 | MCF-7 | breast: | |
| 6 | chr1:153394036..153396419-chr1:153449651..153451627,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000163220 | Chromatin interaction |
| ENSG00000203781 | Chromatin interaction |
| ENSG00000143556 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11205244 | 1.00[EUR][1000 genomes] |
| rs11205245 | 1.00[EUR][1000 genomes] |
| rs16835107 | 1.00[EUR][1000 genomes] |
| rs3006417 | 1.00[EUR][1000 genomes] |
| rs3006418 | 1.00[EUR][1000 genomes] |
| rs3006419 | 0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3006474 | 1.00[EUR][1000 genomes] |
| rs3014821 | 1.00[EUR][1000 genomes] |
| rs3014877 | 1.00[EUR][1000 genomes] |
| rs3014882 | 1.00[EUR][1000 genomes] |
| rs55900893 | 1.00[EUR][1000 genomes] |
| rs61555689 | 1.00[EUR][1000 genomes] |
| rs73018429 | 1.00[EUR][1000 genomes] |
| rs74133619 | 1.00[EUR][1000 genomes] |
| rs74133622 | 1.00[EUR][1000 genomes] |
| rs74133623 | 1.00[EUR][1000 genomes] |
| rs74136421 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010488 | chr1:152901263-153670972 | Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 236 gene(s) | inside rSNPs | diseases |
| 2 | nsv535171 | chr1:152901263-153670972 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 236 gene(s) | inside rSNPs | diseases |
| 3 | nsv533877 | chr1:152923645-153468131 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002705 | chr1:153307852-153525589 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 152 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
