Variant report

Variant	rs3014877
Chromosome Location	chr1:153342446-153342447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153336912..153340188-chr1:153342336..153344449,3	K562	blood:
2	chr1:153342148..153344034-chr1:153456102..153458087,3	MCF-7	breast:
3	chr1:153326747..153345757-chr1:153352900..153372983,150	MCF-7	breast:
4	chr1:153341060..153343420-chr1:153479644..153482399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143546	Chromatin interaction
ENSG00000237008	Chromatin interaction
ENSG00000224784	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11205244	1.00[EUR][1000 genomes]
rs11205245	1.00[EUR][1000 genomes]
rs16835107	1.00[EUR][1000 genomes]
rs3006417	1.00[EUR][1000 genomes]
rs3006418	1.00[EUR][1000 genomes]
rs3006419	1.00[EUR][1000 genomes]
rs3006474	1.00[EUR][1000 genomes]
rs3006484	1.00[AMR][1000 genomes]
rs3006487	1.00[AMR][1000 genomes]
rs3014820	1.00[EUR][1000 genomes]
rs3014821	1.00[EUR][1000 genomes]
rs3014882	1.00[EUR][1000 genomes]
rs55900893	1.00[EUR][1000 genomes]
rs55955219	1.00[EUR][1000 genomes]
rs61555689	1.00[EUR][1000 genomes]
rs73018429	1.00[EUR][1000 genomes]
rs74133619	1.00[EUR][1000 genomes]
rs74133622	1.00[EUR][1000 genomes]
rs74133623	1.00[EUR][1000 genomes]
rs74136421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv947326	chr1:153340559-153352474	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153333600-153346200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:153338200-153343200	Weak transcription	HMEC	breast
3	chr1:153338200-153343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:153338400-153343200	Weak transcription	NHEK	skin
5	chr1:153338400-153343600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:153339600-153343000	Enhancers	Primary B cells from cord blood	blood
7	chr1:153340000-153350400	Enhancers	Fetal Intestine Large	intestine
8	chr1:153340400-153344000	Enhancers	Fetal Intestine Small	intestine
9	chr1:153340400-153349000	Weak transcription	Spleen	Spleen
10	chr1:153340800-153343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:153341400-153347800	Weak transcription	Placenta	Placenta
12	chr1:153341800-153343200	Enhancers	Fetal Kidney	kidney
13	chr1:153342000-153343200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:153342200-153342600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr1:153342200-153342600	Enhancers	Esophagus	oesophagus
16	chr1:153342400-153343200	Enhancers	Monocytes-CD14+_RO01746	blood

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