Variant report

Variant	rs56895582
Chromosome Location	chr1:222184156-222184157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56727068	0.90[AFR][1000 genomes]
rs58894876	0.82[AFR][1000 genomes]
rs73120780	0.90[AFR][1000 genomes]
rs73120784	0.90[AFR][1000 genomes]
rs73124572	0.82[AFR][1000 genomes]
rs73124575	0.95[AFR][1000 genomes]
rs73124576	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222183200-222185600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:222183200-222191400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:222184000-222184800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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