Variant report

Variant	rs73124576
Chromosome Location	chr1:222194603-222194604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56727068	0.85[AFR][1000 genomes]
rs56895582	0.95[AFR][1000 genomes]
rs73120780	0.85[AFR][1000 genomes]
rs73120784	0.85[AFR][1000 genomes]
rs73124575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222193800-222194800	Enhancers	Liver	Liver
2	chr1:222194000-222195600	Enhancers	HSMM	muscle
3	chr1:222194200-222195200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:222194200-222195200	Enhancers	Osteobl	bone
5	chr1:222194400-222195000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:222194600-222195000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:222194600-222195000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:222194600-222195000	Enhancers	Fetal Lung	lung
9	chr1:222194600-222195000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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