Variant report

Variant	rs56909539
Chromosome Location	chr3:132945313-132945314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57540547	0.81[AFR][1000 genomes]
rs58117673	0.85[AFR][1000 genomes]
rs58123591	0.81[AFR][1000 genomes]
rs58632460	0.81[AFR][1000 genomes]
rs58814497	0.86[AFR][1000 genomes]
rs60361914	0.86[AFR][1000 genomes]
rs61568127	0.84[AFR][1000 genomes]
rs61640323	1.00[AFR][1000 genomes]
rs7628868	0.81[AFR][1000 genomes]
rs7629209	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132943200-132948000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:132943600-132948800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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