Variant report

Variant	rs7628868
Chromosome Location	chr3:133037577-133037578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56909539	0.81[AFR][1000 genomes]
rs57540547	1.00[AFR][1000 genomes]
rs58117673	0.96[AFR][1000 genomes]
rs58123591	1.00[AFR][1000 genomes]
rs58632460	1.00[AFR][1000 genomes]
rs61640323	0.81[AFR][1000 genomes]
rs6773740	0.96[AFR][1000 genomes]
rs6783848	0.83[AFR][1000 genomes]
rs6795863	0.92[AFR][1000 genomes]
rs6800688	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014344	chr3:133024614-133042938	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
2	chr3:133021000-133037600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:133034000-133038000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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