Variant report

Variant	rs6783848
Chromosome Location	chr3:133068186-133068187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57540547	0.83[AFR][1000 genomes]
rs58117673	0.87[AFR][1000 genomes]
rs58123591	0.83[AFR][1000 genomes]
rs58632460	0.83[AFR][1000 genomes]
rs6773740	0.88[AFR][1000 genomes]
rs6795863	0.84[AFR][1000 genomes]
rs6800688	0.88[AFR][1000 genomes]
rs7628868	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133065600-133070600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:133067800-133071800	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links