Variant report

Variant	rs56911258
Chromosome Location	chr5:68449468-68449469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11950560	0.93[AMR][1000 genomes]
rs11956457	0.93[AMR][1000 genomes]
rs11956460	0.93[AMR][1000 genomes]
rs11957226	0.93[AMR][1000 genomes]
rs11957252	0.83[AMR][1000 genomes]
rs55696804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57402724	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58381452	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58742544	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59776629	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60029609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244656	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61414473	0.93[AMR][1000 genomes]
rs61641671	0.93[AMR][1000 genomes]
rs6868639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876347	0.93[AMR][1000 genomes]
rs6876502	0.93[AMR][1000 genomes]
rs6887755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772307	0.93[AMR][1000 genomes]
rs73772310	1.00[AMR][1000 genomes]
rs7736273	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3378789	chr5:68438275-68540725	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv527990	chr5:68448694-68455166	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68443600-68462000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:68445400-68452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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