Variant report

Variant	rs7736273
Chromosome Location	chr5:68434371-68434372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11950560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11957226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11957252	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16898593	0.81[AMR][1000 genomes]
rs55696804	0.93[AMR][1000 genomes]
rs56911258	0.93[AMR][1000 genomes]
rs57402724	0.87[AMR][1000 genomes]
rs58381452	0.87[AMR][1000 genomes]
rs58742544	0.82[AMR][1000 genomes]
rs59776629	0.87[AMR][1000 genomes]
rs60029609	0.93[AMR][1000 genomes]
rs61244656	0.82[AMR][1000 genomes]
rs61414473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61641671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6868639	0.93[AMR][1000 genomes]
rs6876347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876502	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6887755	0.93[AMR][1000 genomes]
rs73772307	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772309	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73772310	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv881765	chr5:68379836-68448694	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv881766	chr5:68401941-68448694	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68406200-68438400	Weak transcription	Aorta	Aorta
2	chr5:68412400-68434600	Weak transcription	Psoas Muscle	Psoas
3	chr5:68416400-68445000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:68420600-68434800	Weak transcription	Fetal Brain Male	brain
5	chr5:68421600-68447000	Weak transcription	Ovary	ovary
6	chr5:68425400-68434400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:68426400-68434600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:68426400-68437800	Weak transcription	Hela-S3	cervix
9	chr5:68430400-68434400	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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