Variant report

Variant	rs56922858
Chromosome Location	chr7:127574550-127574551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127568808..127571707-chr7:127574376..127576396,4	K562	blood:
2	chr7:127568481..127572943-chr7:127573201..127576396,5	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs55673039	0.81[AFR][1000 genomes]
rs55820323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997549	0.81[AFR][1000 genomes]
rs56221924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56258700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347144	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57683992	0.81[AFR][1000 genomes]
rs57866092	0.81[AFR][1000 genomes]
rs58102896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58659499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60776739	0.81[AFR][1000 genomes]
rs60805384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60865612	0.81[AFR][1000 genomes]
rs61165973	0.81[AFR][1000 genomes]
rs6951924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721003	0.81[AFR][1000 genomes]
rs73721004	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721006	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721018	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721019	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721024	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721025	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721262	0.87[AFR][1000 genomes]
rs73721265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721270	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721275	0.81[AFR][1000 genomes]
rs73721276	0.81[AFR][1000 genomes]
rs73721277	0.81[AFR][1000 genomes]
rs73721280	0.81[AFR][1000 genomes]
rs73721281	0.81[AFR][1000 genomes]
rs73721284	0.81[AFR][1000 genomes]
rs73721285	0.81[AFR][1000 genomes]
rs73721286	0.81[AFR][1000 genomes]
rs73721287	0.81[AFR][1000 genomes]
rs73721290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723061	0.81[AFR][1000 genomes]
rs73723062	0.81[AFR][1000 genomes]
rs73723063	0.81[AFR][1000 genomes]
rs73723064	0.81[AFR][1000 genomes]
rs73723067	0.81[AFR][1000 genomes]
rs73723070	0.81[AFR][1000 genomes]
rs73723071	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127562200-127589800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:127567600-127581400	Strong transcription	K562	blood
3	chr7:127567800-127577200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:127568000-127576200	Strong transcription	NHEK	skin
5	chr7:127568200-127577200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:127568200-127583400	Weak transcription	Fetal Heart	heart
7	chr7:127568200-127594000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:127568600-127577000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:127569000-127574800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:127569000-127576600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:127569200-127575000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:127569200-127575600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:127569800-127615600	Weak transcription	Colonic Mucosa	Colon
14	chr7:127570000-127577200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:127570000-127577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:127570000-127577400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:127570000-127583800	Weak transcription	Psoas Muscle	Psoas
18	chr7:127570000-127585800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:127570000-127591400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:127570200-127577200	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:127570600-127575600	Weak transcription	Pancreas	Pancrea
22	chr7:127570600-127575600	Weak transcription	Spleen	Spleen
23	chr7:127570600-127576000	Weak transcription	Right Atrium	heart
24	chr7:127570600-127576000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:127570600-127584600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:127570600-127615600	Weak transcription	Small Intestine	intestine
27	chr7:127570600-127615800	Weak transcription	Esophagus	oesophagus
28	chr7:127570600-127616400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:127570800-127577800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:127570800-127583600	Weak transcription	Lung	lung
31	chr7:127570800-127589200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:127570800-127599600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:127570800-127618200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr7:127571000-127575600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:127571000-127615600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:127571000-127615800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:127571200-127577200	Weak transcription	NHDF-Ad	bronchial
38	chr7:127571400-127578000	Weak transcription	NHLF	lung
39	chr7:127571400-127583600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:127571400-127589800	Weak transcription	Fetal Stomach	stomach
41	chr7:127571400-127617800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr7:127571600-127578400	Weak transcription	HMEC	breast
43	chr7:127571600-127582000	Weak transcription	Hela-S3	cervix
44	chr7:127571600-127582600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:127571600-127583600	Weak transcription	Right Ventricle	heart
46	chr7:127571600-127584800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:127571600-127594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:127571600-127618000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:127571800-127574600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:127571800-127577600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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