Variant report

Variant	rs58659499
Chromosome Location	chr7:127570760-127570761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127569906..127572295-chr7:127576396..127579009,2	K562	blood:
2	chr7:127560049..127563219-chr7:127566241..127571212,6	K562	blood:
3	chr7:127568808..127571707-chr7:127574376..127576396,4	K562	blood:
4	chr7:127568481..127572943-chr7:127573201..127576396,5	K562	blood:
5	chr7:127557505..127559222-chr7:127570595..127572494,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs55673039	0.81[AFR][1000 genomes]
rs55820323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997549	0.81[AFR][1000 genomes]
rs56221924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56258700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347144	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56922858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57683992	0.81[AFR][1000 genomes]
rs57866092	0.81[AFR][1000 genomes]
rs58102896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60776739	0.81[AFR][1000 genomes]
rs60805384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60865612	0.81[AFR][1000 genomes]
rs61165973	0.81[AFR][1000 genomes]
rs6951924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721003	0.81[AFR][1000 genomes]
rs73721004	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721006	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721018	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721019	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721024	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721025	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721262	0.87[AFR][1000 genomes]
rs73721265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721270	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721275	0.81[AFR][1000 genomes]
rs73721276	0.81[AFR][1000 genomes]
rs73721277	0.81[AFR][1000 genomes]
rs73721280	0.81[AFR][1000 genomes]
rs73721281	0.81[AFR][1000 genomes]
rs73721284	0.81[AFR][1000 genomes]
rs73721285	0.81[AFR][1000 genomes]
rs73721286	0.81[AFR][1000 genomes]
rs73721287	0.81[AFR][1000 genomes]
rs73721290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723061	0.81[AFR][1000 genomes]
rs73723062	0.81[AFR][1000 genomes]
rs73723063	0.81[AFR][1000 genomes]
rs73723064	0.81[AFR][1000 genomes]
rs73723067	0.81[AFR][1000 genomes]
rs73723070	0.81[AFR][1000 genomes]
rs73723071	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127562200-127589800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:127567000-127574200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:127567200-127571200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:127567600-127581400	Strong transcription	K562	blood
5	chr7:127567800-127571200	Weak transcription	Right Ventricle	heart
6	chr7:127567800-127571600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:127567800-127571600	Weak transcription	Fetal Brain Female	brain
8	chr7:127567800-127573000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:127567800-127573400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:127567800-127577200	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:127568000-127576200	Strong transcription	NHEK	skin
12	chr7:127568200-127577200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:127568200-127583400	Weak transcription	Fetal Heart	heart
14	chr7:127568200-127594000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:127568400-127571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:127568400-127573200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:127568600-127577000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:127568800-127572000	Strong transcription	HSMM	muscle
19	chr7:127569000-127571800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:127569000-127571800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:127569000-127572200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:127569000-127572200	Strong transcription	Fetal Thymus	thymus
23	chr7:127569000-127574400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:127569000-127574400	Strong transcription	Liver	Liver
25	chr7:127569000-127574800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr7:127569000-127576600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr7:127569200-127570800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:127569200-127570800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:127569200-127570800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:127569200-127570800	Strong transcription	Lung	lung
31	chr7:127569200-127570800	Genic enhancers	Rectal Mucosa Donor 29	rectum
32	chr7:127569200-127570800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
33	chr7:127569200-127571000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:127569200-127571000	Genic enhancers	Primary B cells from cord blood	blood
35	chr7:127569200-127571000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:127569200-127571000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:127569200-127571200	Strong transcription	Fetal Muscle Leg	muscle
38	chr7:127569200-127571200	Strong transcription	Fetal Stomach	stomach
39	chr7:127569200-127571400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:127569200-127571400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:127569200-127571400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:127569200-127571400	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr7:127569200-127571600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:127569200-127571600	Strong transcription	Hela-S3	cervix
45	chr7:127569200-127571600	Strong transcription	HMEC	breast
46	chr7:127569200-127571800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:127569200-127571800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:127569200-127571800	Strong transcription	Thymus	Thymus
49	chr7:127569200-127572000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:127569200-127572000	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links