Variant report

Variant	rs569247973
Chromosome Location	chr19:36662690-36662691
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36654605..36656507-chr19:36659169..36663563,3	K562	blood:
2	chr19:36630037..36631640-chr19:36661058..36663609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126247	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv2752541	chr19:36563057-36690874	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv579425	chr19:36643695-36685753	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3397256	chr19:36661962-36663960	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3373316	chr19:36662543-36663125	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3515209	chr19:36662550-36663100	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1925186	chr19:36662550-36663142	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3350442	chr19:36662558-36663146	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3318524	chr19:36662563-36663108	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3357167	chr19:36662588-36663090	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3318523	chr19:36662611-36663029	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3335932	chr19:36662623-36663028	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3515208	chr19:36662623-36663085	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3515210	chr19:36662623-36663100	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3345687	chr19:36662643-36662998	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3318525	chr19:36662675-36662984	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36642200-36673400	Weak transcription	Primary B cells from cord blood	blood
2	chr19:36643000-36673800	Weak transcription	NH-A	brain
3	chr19:36643800-36673200	Weak transcription	Brain Germinal Matrix	brain
4	chr19:36644400-36673000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:36644400-36673200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:36644400-36673400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr19:36644400-36673400	Weak transcription	Brain Angular Gyrus	brain
8	chr19:36652400-36673400	Weak transcription	Fetal Brain Female	brain
9	chr19:36653000-36673400	Weak transcription	Primary T cells from cord blood	blood
10	chr19:36653200-36662800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:36653200-36673200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:36653200-36673200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr19:36653200-36673400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:36653200-36673400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr19:36653200-36673400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:36653200-36673400	Weak transcription	HMEC	breast
17	chr19:36653200-36673600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:36653200-36681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:36653200-36684600	Weak transcription	Aorta	Aorta
20	chr19:36655000-36673600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:36655800-36673400	Weak transcription	Fetal Brain Male	brain
22	chr19:36657800-36673400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr19:36658000-36673600	Weak transcription	Fetal Stomach	stomach
24	chr19:36660000-36673400	Weak transcription	Lung	lung
25	chr19:36660400-36673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr19:36660400-36673400	Weak transcription	HSMMtube	muscle
27	chr19:36660400-36673600	Weak transcription	Pancreas	Pancrea
28	chr19:36660600-36663200	Weak transcription	Right Atrium	heart
29	chr19:36660600-36673400	Weak transcription	Thymus	Thymus
30	chr19:36660800-36673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr19:36660800-36673200	Weak transcription	HSMM	muscle
32	chr19:36660800-36673400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr19:36660800-36673400	Weak transcription	Brain Substantia Nigra	brain
34	chr19:36660800-36673400	Weak transcription	Esophagus	oesophagus
35	chr19:36660800-36673600	Weak transcription	Right Ventricle	heart
36	chr19:36660800-36673600	Weak transcription	Spleen	Spleen
37	chr19:36661800-36664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr19:36661800-36664400	Weak transcription	HepG2	liver
39	chr19:36661800-36668800	Weak transcription	Psoas Muscle	Psoas
40	chr19:36661800-36673000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:36661800-36673000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:36661800-36673000	Weak transcription	Fetal Intestine Small	intestine
43	chr19:36661800-36673200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr19:36661800-36673200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:36661800-36673200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr19:36661800-36673200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr19:36661800-36673200	Weak transcription	Adipose Nuclei	Adipose
48	chr19:36661800-36673200	Weak transcription	Liver	Liver
49	chr19:36661800-36673200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr19:36661800-36673200	Weak transcription	Brain Hippocampus Middle	brain

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