Variant report

Variant	rs569301937
Chromosome Location	chr11:36343168-36343169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv32890	chr11:36343052-36343837	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36336800-36343400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:36341200-36346400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:36341200-36348400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
5	chr11:36342200-36348200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:36342600-36343400	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:36342800-36343400	Enhancers	Fetal Thymus	thymus
8	chr11:36342800-36343800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:36343000-36343200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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