Variant report

Variant	esv32890
Chromosome Location	chr11:36343052-36343837
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD9-1	chr11:36342708-36343153	ENSG00000254566

Extended variants
information (count: 38 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575138949	chr11:36343073-36343074	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs542297632	chr11:36343109-36343110	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs115528561	chr11:36343123-36343124	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs547291012	chr11:36343130-36343131	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs567191608	chr11:36343150-36343151	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs535494217	chr11:36343152-36343153	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs548946197	chr11:36343162-36343163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569301937	chr11:36343168-36343169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs142109615	chr11:36343191-36343192	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs571904426	chr11:36343192-36343193	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs150907392	chr11:36343203-36343204	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs534362576	chr11:36343263-36343264	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554520312	chr11:36343301-36343302	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs372907589	chr11:36343303-36343304	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs574372500	chr11:36343308-36343309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs372545606	chr11:36343343-36343344	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs542671706	chr11:36343349-36343350	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs34687494	chr11:36343388-36343389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs10742369	chr11:36343390-36343391	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs558702451	chr11:36343410-36343411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs150193181	chr11:36343411-36343412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs139408939	chr11:36343426-36343427	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs149889021	chr11:36343430-36343431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs369777704	chr11:36343474-36343475	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs191558319	chr11:36343482-36343483	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs540236195	chr11:36343485-36343486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs564778537	chr11:36343515-36343516	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs183893858	chr11:36343516-36343517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs559755435	chr11:36343535-36343536	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs370031632	chr11:36343541-36343542	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs11603116	chr11:36343608-36343609	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs189298623	chr11:36343639-36343640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs547247457	chr11:36343648-36343649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs529936295	chr11:36343684-36343685	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs7127214	chr11:36343693-36343694	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs192676831	chr11:36343717-36343718	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs531561625	chr11:36343766-36343767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570219951	chr11:36343820-36343821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
Aniridia syndrome	21572526	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Retinoblastoma	22278416	CNVD
Denys-drash syndrome	21085971	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
WAGR syndrome	16773131	CNVD
Disorders of sex development	22290220	CNVD
Aniridia syndrome	17204608	CNVD
Mental retardation	17204608	CNVD
WAGR syndrome	19617690	CNVD
genitourinary abnormalities	17204608	CNVD
Breast cancer	16397240	CNVD
Mental retardation	16773131	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17160897	CNVD
Cancer	21183584	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
WAGR syndrome	22470819	CNVD
Neurodevelopmental disorder	22521361	CNVD
Denys-drash syndrome	19566914	CNVD
Familial wilms tumor	19566914	CNVD
Frasier syndrome	19566914	CNVD
Non-small cell lung cancer	21829676	CNVD
WAGR syndrome	20603712	CNVD
Autism	17322880	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21858162	CNVD
Cancer	20164920	CNVD
Breast cancer	16620391	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36336800-36343400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:36341200-36346400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:36341200-36348400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
5	chr11:36342200-36348200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:36342600-36343400	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:36342800-36343400	Enhancers	Fetal Thymus	thymus
8	chr11:36342800-36343800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:36343000-36343200	Enhancers	Brain Hippocampus Middle	brain
10	chr11:36343400-36343600	Enhancers	Fetal Intestine Small	intestine
11	chr11:36343400-36344400	Weak transcription	Fetal Thymus	thymus
12	chr11:36343800-36345800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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