Variant report

Variant	rs11603116
Chromosome Location	chr11:36343608-36343609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11033546	1.00[CHB][hapmap]
rs11033551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033561	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033562	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033571	0.87[AMR][1000 genomes]
rs11033574	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs11603868	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11605183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821536	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226509	1.00[CHB][hapmap]
rs1346119	0.82[CHB][hapmap]
rs330258	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7129893	0.96[ASN][1000 genomes]
rs720758	1.00[CHB][hapmap]
rs72948137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948144	1.00[ASN][1000 genomes]
rs72950009	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950011	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950012	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950014	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950015	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72950021	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950042	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950046	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950047	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950049	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950054	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72950059	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv32890	chr11:36343052-36343837	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36341200-36346400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:36341200-36348400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:36342200-36348200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:36342800-36343800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:36343400-36344400	Weak transcription	Fetal Thymus	thymus

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