Variant report
| Variant | rs7129893 |
|---|---|
| Chromosome Location | chr11:36347510-36347511 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr11:36347407-36347512 | IMR90 | lung: | n/a | chr11:36347493-36347507 chr11:36347494-36347505 chr11:36347495-36347506 chr11:36347495-36347506 chr11:36347494-36347505 |
| 2 | MAFK | chr11:36347080-36347543 | HepG2 | liver: | n/a | chr11:36347493-36347507 chr11:36347494-36347505 chr11:36347495-36347506 chr11:36347495-36347506 chr11:36347494-36347505 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:36346592..36348249-chr11:36358245..36360151,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254566 | TF binding region |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs11033551 | 0.96[ASN][1000 genomes] |
| rs11033561 | 1.00[ASN][1000 genomes] |
| rs11033562 | 1.00[ASN][1000 genomes] |
| rs11603116 | 0.96[ASN][1000 genomes] |
| rs11603868 | 0.80[ASN][1000 genomes] |
| rs11605183 | 1.00[ASN][1000 genomes] |
| rs11821536 | 0.98[ASN][1000 genomes] |
| rs12416779 | 0.83[AFR][1000 genomes] |
| rs12417212 | 0.83[AFR][1000 genomes] |
| rs12418187 | 0.83[AFR][1000 genomes] |
| rs12418233 | 0.83[AFR][1000 genomes] |
| rs12419146 | 1.00[AFR][1000 genomes] |
| rs12419171 | 1.00[AFR][1000 genomes] |
| rs12419869 | 0.83[AFR][1000 genomes] |
| rs12419905 | 0.83[AFR][1000 genomes] |
| rs12421046 | 0.83[AFR][1000 genomes] |
| rs12421160 | 1.00[AFR][1000 genomes] |
| rs12421193 | 0.98[AFR][1000 genomes] |
| rs12421413 | 0.83[AFR][1000 genomes] |
| rs12421441 | 0.83[AFR][1000 genomes] |
| rs1584228 | 1.00[AFR][1000 genomes] |
| rs35564850 | 0.82[AFR][1000 genomes] |
| rs57949473 | 1.00[AFR][1000 genomes] |
| rs7114134 | 1.00[AFR][1000 genomes] |
| rs7117688 | 1.00[AFR][1000 genomes] |
| rs72948137 | 0.96[ASN][1000 genomes] |
| rs72948144 | 0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72950009 | 1.00[ASN][1000 genomes] |
| rs72950011 | 1.00[ASN][1000 genomes] |
| rs72950012 | 1.00[ASN][1000 genomes] |
| rs72950014 | 1.00[ASN][1000 genomes] |
| rs72950015 | 0.96[ASN][1000 genomes] |
| rs72950021 | 1.00[ASN][1000 genomes] |
| rs72950042 | 1.00[ASN][1000 genomes] |
| rs72950046 | 1.00[ASN][1000 genomes] |
| rs72950047 | 1.00[ASN][1000 genomes] |
| rs72950049 | 1.00[ASN][1000 genomes] |
| rs72950054 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467791 | chr11:36108497-36999385 | Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv554003 | chr11:36108497-36999385 | ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 3 | esv8636 | chr11:36347366-36347543 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:36341200-36348400 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr11:36341400-36355800 | Weak transcription | Brain Substantia Nigra | brain |
| 3 | chr11:36342200-36348200 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
