Variant report

Variant	rs72950054
Chromosome Location	chr11:36370101-36370102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11033551	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11033561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11033562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11033571	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11033574	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11603116	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11603868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605183	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11821536	0.92[EUR][1000 genomes]
rs7129893	0.80[ASN][1000 genomes]
rs72948137	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72950009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950014	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950015	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72950021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950042	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950046	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950047	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950049	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72950059	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36362800-36371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36365200-36374000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:36365200-36374200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:36367000-36375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:36367400-36371800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:36367400-36375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:36367400-36375600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:36367400-36375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:36367600-36375800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:36367800-36375800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:36369400-36371800	Weak transcription	Gastric	stomach
14	chr11:36369400-36374200	Weak transcription	GM12878-XiMat	blood
15	chr11:36369600-36375400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:36369800-36371200	Weak transcription	Fetal Intestine Large	intestine
17	chr11:36369800-36371400	Enhancers	Skeletal Muscle Male	skeletal muscle

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