Variant report

Variant	rs11033574
Chromosome Location	chr11:36385156-36385157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36384425..36387121-chr11:36398360..36400122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11033546	0.85[CHB][hapmap]
rs11033551	0.80[EUR][1000 genomes]
rs11033561	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11033562	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11033571	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11603116	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs11603868	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11605183	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs12226509	0.85[CHB][hapmap]
rs1346119	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs330258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs720758	0.85[CHB][hapmap]
rs72948137	0.80[EUR][1000 genomes]
rs72950009	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950011	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950012	0.84[EUR][1000 genomes]
rs72950014	0.84[EUR][1000 genomes]
rs72950015	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72950021	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950042	0.84[EUR][1000 genomes]
rs72950046	0.84[EUR][1000 genomes]
rs72950047	0.84[EUR][1000 genomes]
rs72950049	0.84[EUR][1000 genomes]
rs72950054	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950059	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36380600-36385200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:36381200-36385600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:36381600-36388400	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:36382000-36385800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:36382000-36385800	Enhancers	Fetal Thymus	thymus
9	chr11:36382000-36386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:36382000-36386400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:36382000-36386600	Enhancers	Fetal Intestine Small	intestine
12	chr11:36382000-36386800	Enhancers	Fetal Intestine Large	intestine
13	chr11:36382000-36387800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:36382200-36385400	Enhancers	HSMM	muscle
15	chr11:36382400-36386800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:36382400-36388600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:36382600-36385200	Weak transcription	Thymus	Thymus
18	chr11:36382800-36387200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr11:36382800-36388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:36383200-36385200	Enhancers	Osteobl	bone
22	chr11:36383200-36385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:36383200-36385600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:36383200-36386400	Enhancers	HSMMtube	muscle
25	chr11:36383400-36385200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:36383400-36385400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr11:36383400-36386400	Enhancers	Small Intestine	intestine
28	chr11:36383600-36385200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:36383600-36385200	Enhancers	Fetal Muscle Trunk	muscle
30	chr11:36383600-36385800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:36383600-36386600	Enhancers	NH-A	brain
32	chr11:36383800-36385200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:36383800-36385200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr11:36383800-36385200	Enhancers	Brain Substantia Nigra	brain
35	chr11:36383800-36385400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:36383800-36385400	Weak transcription	Brain Anterior Caudate	brain
37	chr11:36383800-36385400	Enhancers	NHLF	lung
38	chr11:36383800-36386400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:36383800-36386600	Enhancers	Fetal Kidney	kidney
40	chr11:36383800-36386600	Enhancers	Hela-S3	cervix
41	chr11:36383800-36386600	Enhancers	HMEC	breast
42	chr11:36383800-36386800	Enhancers	NHEK	skin
43	chr11:36383800-36387600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:36383800-36388000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:36383800-36389000	Weak transcription	Ovary	ovary
46	chr11:36384000-36385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:36384000-36385600	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:36384000-36386000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:36384000-36386800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:36384200-36385200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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