Variant report

Variant	rs330258
Chromosome Location	chr11:36386282-36386283
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36384425..36387121-chr11:36398360..36400122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033546	0.85[CHB][hapmap]
rs11033574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11603116	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11605183	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12226509	0.85[CHB][hapmap]
rs1346119	1.00[CHB][hapmap]
rs720758	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:36381600-36388400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:36382000-36386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:36382000-36386400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:36382000-36386600	Enhancers	Fetal Intestine Small	intestine
8	chr11:36382000-36386800	Enhancers	Fetal Intestine Large	intestine
9	chr11:36382000-36387800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:36382400-36386800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:36382400-36388600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:36382800-36387200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:36382800-36388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
15	chr11:36383200-36386400	Enhancers	HSMMtube	muscle
16	chr11:36383400-36386400	Enhancers	Small Intestine	intestine
17	chr11:36383600-36386600	Enhancers	NH-A	brain
18	chr11:36383800-36386400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:36383800-36386600	Enhancers	Fetal Kidney	kidney
20	chr11:36383800-36386600	Enhancers	Hela-S3	cervix
21	chr11:36383800-36386600	Enhancers	HMEC	breast
22	chr11:36383800-36386800	Enhancers	NHEK	skin
23	chr11:36383800-36387600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:36383800-36388000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:36383800-36389000	Weak transcription	Ovary	ovary
26	chr11:36384000-36386800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:36384200-36386400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:36384200-36386400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:36384400-36386400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:36384600-36387200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:36384600-36387600	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr11:36384800-36386600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr11:36384800-36386600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:36384800-36394000	Weak transcription	Gastric	stomach
35	chr11:36385200-36386400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:36385200-36386800	Enhancers	Colonic Mucosa	Colon
37	chr11:36385200-36387200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:36385200-36387400	Weak transcription	Brain Substantia Nigra	brain
39	chr11:36385200-36389400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:36385200-36393800	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:36385400-36386400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:36385400-36394000	Weak transcription	Pancreas	Pancrea
43	chr11:36385600-36386400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:36385600-36389000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:36385600-36389000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:36385600-36389200	Weak transcription	Spleen	Spleen
47	chr11:36386000-36386400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:36386200-36386400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:36386200-36386400	Enhancers	Primary T helper cells fromperipheralblood	blood

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