Variant report

Variant	rs12226509
Chromosome Location	chr11:36330728-36330729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36328951..36330934-chr11:36522654..36524695,2	K562	blood:
2	chr11:36329173..36331205-chr11:36333341..36336022,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033574	0.85[CHB][hapmap]
rs11603116	1.00[CHB][hapmap]
rs11605183	1.00[CHB][hapmap]
rs1346119	0.85[CHB][hapmap]
rs330258	0.85[CHB][hapmap]
rs720758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3414530	chr11:36330262-36334650	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:36322800-36331400	Weak transcription	Gastric	stomach
4	chr11:36323000-36331400	Weak transcription	Lung	lung
5	chr11:36323000-36331400	Weak transcription	Pancreas	Pancrea
6	chr11:36323000-36331400	Weak transcription	Spleen	Spleen
7	chr11:36323000-36333800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:36323000-36334000	Weak transcription	Ovary	ovary
9	chr11:36323000-36334200	Weak transcription	Brain Anterior Caudate	brain
10	chr11:36323000-36335200	Weak transcription	Colonic Mucosa	Colon
11	chr11:36323800-36331400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:36324000-36333800	Weak transcription	Brain Angular Gyrus	brain
13	chr11:36326000-36331200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:36326400-36331600	Weak transcription	HSMMtube	muscle
15	chr11:36326400-36333800	Weak transcription	Fetal Intestine Small	intestine
16	chr11:36327200-36335200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:36328600-36330800	Enhancers	Adipose Nuclei	Adipose
18	chr11:36329000-36335200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:36329600-36330800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:36329600-36332200	Enhancers	Hela-S3	cervix
21	chr11:36329800-36331000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36330000-36335200	Enhancers	HMEC	breast
23	chr11:36330200-36330800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:36330400-36330800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:36330400-36333800	Weak transcription	Osteobl	bone
26	chr11:36330600-36331200	Weak transcription	Brain Substantia Nigra	brain
27	chr11:36330600-36331800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:36330600-36333200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links