Variant report

Variant	rs1346119
Chromosome Location	chr11:36381731-36381732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34926486..34928206-chr11:36379103..36382037,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11033546	0.85[CHB][hapmap]
rs11033571	0.93[ASN][1000 genomes]
rs11033574	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11603116	0.82[CHB][hapmap]
rs11605183	0.85[CHB][hapmap]
rs12226509	0.85[CHB][hapmap]
rs330258	1.00[CHB][hapmap]
rs720758	0.85[CHB][hapmap]
rs72950059	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36374800-36382000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:36376400-36382000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:36376800-36381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:36376800-36382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:36376800-36382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:36376800-36382000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:36376800-36382200	Weak transcription	NHDF-Ad	bronchial
9	chr11:36376800-36382400	Weak transcription	Hela-S3	cervix
10	chr11:36376800-36383200	Weak transcription	HSMMtube	muscle
11	chr11:36377000-36381800	Weak transcription	NHEK	skin
12	chr11:36377000-36382000	Weak transcription	HMEC	breast
13	chr11:36377000-36382200	Weak transcription	HSMM	muscle
14	chr11:36377000-36382400	Weak transcription	NH-A	brain
15	chr11:36377200-36382000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:36377800-36381800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:36378000-36383400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:36378200-36382000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:36378200-36384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:36378400-36382200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:36378400-36382200	Weak transcription	Adipose Nuclei	Adipose
23	chr11:36378400-36383600	Weak transcription	Spleen	Spleen
24	chr11:36378600-36381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:36378600-36382000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:36378600-36382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:36378600-36382400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:36378800-36382000	Weak transcription	Fetal Intestine Large	intestine
29	chr11:36378800-36382200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:36379200-36382000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:36379200-36382000	Weak transcription	Colonic Mucosa	Colon
32	chr11:36379400-36381800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:36380600-36381800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:36380600-36381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:36380600-36382000	Weak transcription	Fetal Thymus	thymus
36	chr11:36380600-36382600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr11:36380600-36385200	Enhancers	Brain Hippocampus Middle	brain
38	chr11:36380800-36382000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:36380800-36384400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:36381000-36382600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:36381200-36382600	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:36381200-36385600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr11:36381400-36382000	Enhancers	GM12878-XiMat	blood
44	chr11:36381400-36384200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:36381400-36384200	Weak transcription	Right Atrium	heart
46	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr11:36381600-36382200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:36381600-36382400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr11:36381600-36382400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:36381600-36382600	Bivalent Enhancer	Primary B cells from cord blood	blood

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