Variant report

Variant	rs569332798
Chromosome Location	chr6:35437559-35437560
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:54366608..54368151-chr6:35435475..35437868,2	MCF-7	breast:
2	chr6:35226066..35229330-chr6:35434346..35438215,4	K562	blood:
3	chr6:35259383..35261485-chr6:35435927..35437799,2	MCF-7	breast:
4	chr6:35435945..35437939-chr6:35694170..35698146,4	MCF-7	breast:
5	chr20:46247769..46250041-chr6:35436696..35439352,2	MCF-7	breast:
6	chr6:34855314..34856910-chr6:35435686..35437650,2	MCF-7	breast:
7	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
8	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
9	chr6:35434857..35438603-chr6:35692996..35696802,4	K562	blood:
10	chr6:26045293..26047313-chr6:35435617..35437589,2	MCF-7	breast:
11	chr6:35270811..35278072-chr6:35434777..35439344,8	MCF-7	breast:
12	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
13	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
14	chr6:35415017..35416617-chr6:35436362..35437925,2	MCF-7	breast:
15	chr6:35437115..35437843-chr6:109415713..109416328,2	Hela-S3	cervix:
16	chr11:2397606..2400001-chr6:35434655..35437647,2	K562	blood:
17	chr6:35434775..35437842-chr6:35701549..35705876,5	MCF-7	breast:
18	chr6:35418617..35424875-chr6:35434196..35438070,12	MCF-7	breast:
19	chr6:35226330..35228825-chr6:35434969..35437843,3	MCF-7	breast:
20	chr6:35360426..35363519-chr6:35436261..35438354,3	K562	blood:
21	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
22	chr6:35435616..35437664-chrX:153627963..153630833,2	K562	blood:
23	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
24	chr6:35433822..35437754-chr6:35703135..35706478,6	K562	blood:
25	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
26	chr6:35436419..35438425-chr6:35888772..35891148,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000064995	Chromatin interaction
ENSG00000238184	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000157343	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000110651	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000123388	Chromatin interaction
ENSG00000232909	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
8	nsv965717	chr6:35437464-35438661	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35435200-35440200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35435600-35437600	Active TSS	Aorta	Aorta
3	chr6:35435600-35437600	Active TSS	Gastric	stomach
4	chr6:35435600-35437600	Active TSS	Sigmoid Colon	Sigmoid Colon
5	chr6:35435600-35437600	Active TSS	HSMMtube	muscle
6	chr6:35435600-35437600	Active TSS	NHDF-Ad	bronchial
7	chr6:35435600-35437800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:35435600-35437800	Active TSS	Ovary	ovary
9	chr6:35435600-35437800	Active TSS	Small Intestine	intestine
10	chr6:35435600-35438800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:35435800-35437600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:35435800-35437600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:35435800-35437600	Active TSS	Fetal Heart	heart
14	chr6:35435800-35437600	Active TSS	Placenta Amnion	Placenta Amnion
15	chr6:35435800-35437800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:35435800-35439200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:35435800-35439200	Transcr. at gene 5' and 3'	NHLF	lung
18	chr6:35436200-35438000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
19	chr6:35436200-35438400	Transcr. at gene 5' and 3'	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:35436200-35438400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
21	chr6:35436200-35440400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35436200-35440600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:35436400-35437800	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:35436400-35438400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:35436400-35439200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
26	chr6:35436400-35439200	Transcr. at gene 5' and 3'	A549	lung
27	chr6:35436400-35439200	Transcr. at gene 5' and 3'	Dnd41	blood
28	chr6:35436400-35439200	Transcr. at gene 5' and 3'	Osteobl	bone
29	chr6:35436400-35439400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
30	chr6:35436400-35439400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
31	chr6:35436400-35439400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
32	chr6:35436400-35440200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:35436400-35440200	Transcr. at gene 5' and 3'	NHEK	skin
34	chr6:35436400-35440600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
35	chr6:35436600-35437600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr6:35436600-35437600	Active TSS	Right Atrium	heart
37	chr6:35436600-35437800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
39	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
40	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
41	chr6:35436600-35438200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
42	chr6:35436600-35438400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:35436600-35438400	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr6:35436600-35438400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
45	chr6:35436600-35438800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
46	chr6:35436600-35438800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:35436600-35438800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:35436600-35438800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:35436600-35439200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
50	chr6:35436600-35439200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin

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