Variant report

Variant	rs56938587
Chromosome Location	chr3:82088122-82088123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57027601	0.82[AFR][1000 genomes]
rs57551871	0.82[AFR][1000 genomes]
rs57996908	0.82[AFR][1000 genomes]
rs58087753	0.82[AFR][1000 genomes]
rs60957164	0.82[AFR][1000 genomes]
rs61484580	0.82[AFR][1000 genomes]
rs72895828	0.82[AFR][1000 genomes]
rs72895832	0.82[AFR][1000 genomes]
rs72895845	0.82[AFR][1000 genomes]
rs72897657	0.82[AFR][1000 genomes]
rs72897671	0.82[AFR][1000 genomes]
rs72897675	0.82[AFR][1000 genomes]
rs72897678	0.82[AFR][1000 genomes]
rs72897682	0.82[AFR][1000 genomes]
rs72897700	0.82[AFR][1000 genomes]
rs72899615	0.82[AFR][1000 genomes]
rs72899624	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82083400-82093000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:82087400-82088200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:82088000-82088200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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