Variant report

Variant	rs56941195
Chromosome Location	chr15:50086378-50086379
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:50086081-50086461	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr15:50086168-50086388	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:50086377-50086427	HRE	kidney:	n/a
2	chr15:50086377-50086427	GM19239	blood:	n/a
3	chr15:50086377-50086427	HEEpiC	esophagus:	n/a
4	chr15:50086377-50086427	H1-hESC	embryonic stem cell:	embryo
5	chr15:50086377-50086427	CMK	blood:	n/a
6	chr15:50086377-50086427	HCPEpiC	choroid plexus:	n/a
7	chr15:50086377-50086427	HRPEpiC	eye:	n/a
8	chr15:50086377-50086427	HCF	heart:	n/a
9	chr15:50086377-50086427	T-47D	breast:	n/a
10	chr15:50086377-50086427	NHDF-neo	bronchial:	n/a
11	chr15:50086377-50086427	HCM	heart:	n/a
12	chr15:50086377-50086427	Jurkat	blood:	n/a
13	chr15:50086377-50086427	Hepatocyte	liver:	n/a
14	chr15:50086377-50086427	AG04450	lung:	fetal
15	chr15:50086377-50086427	HRCEpiC	kidney:	n/a
16	chr15:50086377-50086427	PFSK-1	brain:	n/a
17	chr15:50086377-50086427	SAEC	small airway:	n/a
18	chr15:50086377-50086427	HIPEpiC	eye:	n/a
19	chr15:50086377-50086427	NB4	blood:	n/a
20	chr15:50086377-50086427	K562	blood:	n/a
21	chr15:50086377-50086427	AoSMC	blood vessel:	n/a
22	chr15:50086377-50086427	MCF10A-Er-Src	breast:	n/a
23	chr15:50086377-50086427	A549	lung:	n/a
24	chr15:50086377-50086427	NT2-D1	testis:	n/a
25	chr15:50086377-50086427	LNCaP	prostate:	n/a
26	chr15:50086377-50086427	HCT-116	colon:	n/a
27	chr15:50086377-50086427	AG04449	skin:	fetal
28	chr15:50086377-50086427	RPTEC	kidney:	n/a
29	chr15:50086377-50086427	Hela-S3	cervix:	n/a
30	chr15:50086377-50086427	HMEC	breast:	n/a
31	chr15:50086377-50086427	GM12892	blood:	n/a
32	chr15:50086377-50086427	AG09309	skin:	n/a
33	chr15:50086377-50086427	SK-N-MC	brain:	n/a
34	chr15:50086377-50086427	Caco-2	colon:	n/a
35	chr15:50086377-50086427	IMR90	lung:	fetal
36	chr15:50086377-50086427	SK-N-SH_RA	brain:	n/a
37	chr15:50086377-50086427	BJ	skin:	n/a
38	chr15:50086377-50086427	HepG2	liver:	n/a
39	chr15:50086377-50086427	MCF-7	breast:	n/a
40	chr15:50086377-50086427	HUVEC	blood vessel:	n/a
41	chr15:50086377-50086427	HEK293	kidney:	embryo
42	chr15:50086377-50086427	SK-N-SH	brain:	n/a
43	chr15:50086377-50086427	HNPCEpiC	eye:	n/a
44	chr15:50086377-50086427	SKMC	muscle:	n/a
45	chr15:50086377-50086427	GM12878	blood:	n/a
46	chr15:50086377-50086427	AG10803	skin:	n/a
47	chr15:50086377-50086427	AG09319	gingival:	n/a
48	chr15:50086377-50086427	GM12891	blood:	n/a
49	chr15:50086377-50086427	ECC-1	luminal epithelium:	n/a
50	chr15:50086377-50086427	NHBE	bronchial:	n/a

No data

Variant related genes	Relation type
ENSG00000259388	TF binding region
ENSG00000259388	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs690671	0.87[AFR][1000 genomes]
rs692385	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1528	chr15:50067958-50112958	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047047	chr15:50070224-50125096	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1042311	chr15:50083175-50125096	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761888	chr15:50083187-50125108	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv977869	chr15:50084876-50090745	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv542381	chr15:50086150-50115876	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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