Variant report

Variant	rs56941849
Chromosome Location	chr11:64209891-64209892
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41294410	1.00[AMR][1000 genomes]
rs61744144	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3431374	chr11:64209731-64212252	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64204800-64210000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:64207800-64210000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:64208000-64212400	Weak transcription	Spleen	Spleen
4	chr11:64208400-64211600	Enhancers	Fetal Brain Male	brain
5	chr11:64208400-64212400	Weak transcription	Placenta	Placenta
6	chr11:64208400-64215800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:64209000-64210000	Enhancers	GM12878-XiMat	blood
8	chr11:64209000-64210800	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:64209200-64210200	Enhancers	Primary B cells from cord blood	blood
10	chr11:64209400-64210400	Weak transcription	Fetal Brain Female	brain
11	chr11:64209800-64212000	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:64209800-64212400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:64209800-64215400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:64209800-64215800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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