Variant report

Variant	rs61744144
Chromosome Location	chr11:64326676-64326677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64326666-64326716	K562	blood:	n/a
2	chr11:64326666-64326716	GM19239	blood:	n/a
3	chr11:64326666-64326716	GM06990	blood:	n/a
4	chr11:64326666-64326716	HPAEpiC	pulmonary alveolar:	n/a
5	chr11:64326666-64326716	BE2_C	brain:	n/a
6	chr11:64326666-64326716	HUVEC	blood vessel:	n/a
7	chr11:64326666-64326716	MCF10A-Er-Src	breast:	n/a
8	chr11:64326666-64326716	RPTEC	kidney:	n/a
9	chr11:64326666-64326716	CMK	blood:	n/a
10	chr11:64326666-64326716	H1-hESC	embryonic stem cell:	embryo
11	chr11:64326666-64326716	SAEC	small airway:	n/a
12	chr11:64326666-64326716	HRCEpiC	kidney:	n/a
13	chr11:64326666-64326716	MCF-7	breast:	n/a
14	chr11:64326666-64326716	HCT-116	colon:	n/a
15	chr11:64326666-64326716	AoSMC	blood vessel:	n/a
16	chr11:64326666-64326716	Jurkat	blood:	n/a
17	chr11:64326666-64326716	NB4	blood:	n/a
18	chr11:64326666-64326716	HepG2	liver:	n/a
19	chr11:64326666-64326716	AG10803	skin:	n/a
20	chr11:64326666-64326716	GM12878	blood:	n/a
21	chr11:64326666-64326716	SK-N-MC	brain:	n/a
22	chr11:64326666-64326716	SKMC	muscle:	n/a
23	chr11:64326666-64326716	HAEpiC	amniotic membrane:	n/a
24	chr11:64326666-64326716	HL-60	blood:	n/a
25	chr11:64326666-64326716	IMR90	lung:	fetal
26	chr11:64326666-64326716	NT2-D1	testis:	n/a
27	chr11:64326666-64326716	HCF	heart:	n/a
28	chr11:64326666-64326716	PANC-1	pancreas:	n/a
29	chr11:64326666-64326716	ProgFib	skin:	n/a
30	chr11:64326666-64326716	A549	lung:	n/a
31	chr11:64326666-64326716	HCM	heart:	n/a
32	chr11:64326666-64326716	HRE	kidney:	n/a
33	chr11:64326666-64326716	HMEC	breast:	n/a
34	chr11:64326666-64326716	HIPEpiC	eye:	n/a
35	chr11:64326666-64326716	PrEC	prostate:	n/a
36	chr11:64326666-64326716	BJ	skin:	n/a
37	chr11:64326666-64326716	SK-N-SH	brain:	n/a
38	chr11:64326666-64326716	GM12891	blood:	n/a
39	chr11:64326666-64326716	AG09319	gingival:	n/a
40	chr11:64326666-64326716	T-47D	breast:	n/a
41	chr11:64326666-64326716	AG04449	skin:	fetal
42	chr11:64326666-64326716	HRPEpiC	eye:	n/a
43	chr11:64326666-64326716	ovcar-3	ovarian:	n/a
44	chr11:64326666-64326716	HEK293	kidney:	embryo
45	chr11:64326666-64326716	ECC-1	luminal epithelium:	n/a
46	chr11:64326666-64326716	AG04450	lung:	fetal
47	chr11:64326666-64326716	PFSK-1	brain:	n/a
48	chr11:64326666-64326716	U87	brain:	n/a
49	chr11:64326666-64326716	SK-N-SH_RA	brain:	n/a
50	chr11:64326666-64326716	NHBE	bronchial:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64326089..64328505-chr11:64330368..64332931,2	K562	blood:
2	chr11:64325775..64328636-chr11:64366449..64368257,2	K562	blood:
3	chr11:64325204..64328636-chr11:64366449..64368317,3	K562	blood:

No data

Variant related genes	Relation type
SLC22A11	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56941849	1.00[AMR][1000 genomes]
rs71581767	0.81[AFR][1000 genomes]
rs71581768	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64322800-64327200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64322800-64334000	Weak transcription	Right Atrium	heart
3	chr11:64323000-64333400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:64323200-64326800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:64323200-64327600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:64323800-64332600	Weak transcription	Pancreas	Pancrea
7	chr11:64324200-64327400	Weak transcription	Fetal Thymus	thymus
8	chr11:64324400-64327600	Weak transcription	Spleen	Spleen
9	chr11:64324600-64328400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:64324600-64328800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:64325000-64327200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:64325000-64328200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:64325200-64327200	Weak transcription	Fetal Intestine Large	intestine
14	chr11:64325200-64328200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:64325400-64328000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:64325600-64326800	Flanking Active TSS	Placenta	Placenta
17	chr11:64325600-64328000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:64325600-64328400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:64325800-64327200	Enhancers	Fetal Muscle Leg	muscle
20	chr11:64325800-64328000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:64325800-64328200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:64325800-64328200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:64325800-64328800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:64326000-64328000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:64326200-64327200	Weak transcription	Fetal Kidney	kidney
26	chr11:64326200-64333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:64326400-64327200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:64326400-64327600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:64326400-64328400	Enhancers	HepG2	liver
30	chr11:64326400-64328800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr11:64326600-64327000	Weak transcription	H9 Cell Line	embryonic stem cell

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