Variant report

Variant	rs71581768
Chromosome Location	chr11:64357910-64357911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64357910-64357960	HEEpiC	esophagus:	n/a
2	chr11:64357910-64357960	NB4	blood:	n/a
3	chr11:64357910-64357960	PrEC	prostate:	n/a
4	chr11:64357910-64357960	HRCEpiC	kidney:	n/a
5	chr11:64357910-64357960	GM12878	blood:	n/a
6	chr11:64357910-64357960	U87	brain:	n/a
7	chr11:64357910-64357960	Hepatocyte	liver:	n/a
8	chr11:64357910-64357960	Hela-S3	cervix:	n/a
9	chr11:64357910-64357960	HMEC	breast:	n/a
10	chr11:64357910-64357960	HCM	heart:	n/a
11	chr11:64357910-64357960	NHBE	bronchial:	n/a
12	chr11:64357910-64357960	Caco-2	colon:	n/a
13	chr11:64357910-64357960	HCPEpiC	choroid plexus:	n/a
14	chr11:64357910-64357960	GM06990	blood:	n/a
15	chr11:64357910-64357960	AG09309	skin:	n/a
16	chr11:64357910-64357960	HRE	kidney:	n/a
17	chr11:64357910-64357960	HAEpiC	amniotic membrane:	n/a
18	chr11:64357910-64357960	BE2_C	brain:	n/a
19	chr11:64357910-64357960	NT2-D1	testis:	n/a
20	chr11:64357910-64357960	AG04450	lung:	fetal
21	chr11:64357910-64357960	AG04449	skin:	fetal
22	chr11:64357910-64357960	HCT-116	colon:	n/a
23	chr11:64357910-64357960	HNPCEpiC	eye:	n/a
24	chr11:64357910-64357960	SK-N-SH	brain:	n/a
25	chr11:64357910-64357960	HRPEpiC	eye:	n/a
26	chr11:64357910-64357960	HEK293	kidney:	embryo
27	chr11:64357910-64357960	H1-hESC	embryonic stem cell:	embryo
28	chr11:64357910-64357960	SK-N-MC	brain:	n/a
29	chr11:64357910-64357960	GM12892	blood:	n/a
30	chr11:64357910-64357960	BJ	skin:	n/a
31	chr11:64357910-64357960	HCF	heart:	n/a
32	chr11:64357910-64357960	HL-60	blood:	n/a
33	chr11:64357910-64357960	IMR90	lung:	fetal
34	chr11:64357910-64357960	RPTEC	kidney:	n/a
35	chr11:64357910-64357960	AG10803	skin:	n/a
36	chr11:64357910-64357960	Jurkat	blood:	n/a
37	chr11:64357910-64357960	AoSMC	blood vessel:	n/a
38	chr11:64357910-64357960	SKMC	muscle:	n/a
39	chr11:64357910-64357960	CMK	blood:	n/a
40	chr11:64357910-64357960	GM12891	blood:	n/a
41	chr11:64357910-64357960	MCF-7	breast:	n/a
42	chr11:64357910-64357960	MCF10A-Er-Src	breast:	n/a
43	chr11:64357910-64357960	A549	lung:	n/a
44	chr11:64357910-64357960	PANC-1	pancreas:	n/a
45	chr11:64357910-64357960	NH-A	brain:	n/a
46	chr11:64357910-64357960	ECC-1	luminal epithelium:	n/a
47	chr11:64357910-64357960	NHDF-neo	bronchial:	n/a
48	chr11:64357910-64357960	HepG2	liver:	n/a
49	chr11:64357910-64357960	K562	blood:	n/a
50	chr11:64357910-64357960	ProgFib	skin:	n/a

No data

Variant related genes	Relation type
SLC22A12	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61744144	0.81[AFR][1000 genomes]
rs71534256	1.00[AMR][1000 genomes]
rs71579865	1.00[AMR][1000 genomes]
rs71579868	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71581746	1.00[AMR][1000 genomes]
rs71581767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71583710	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv468596	chr11:64334114-64527080	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv555195	chr11:64334114-64527080	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
8	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
9	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
10	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64357200-64359200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:64357600-64358400	Enhancers	HepG2	liver
3	chr11:64357800-64358000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:64357800-64359200	Enhancers	Fetal Intestine Large	intestine
5	chr11:64357800-64359200	Enhancers	Fetal Intestine Small	intestine

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