Variant report

Variant	rs56945229
Chromosome Location	chr15:78184860-78184861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs56758768	0.92[AMR][1000 genomes]
rs57338257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485870	0.90[EUR][1000 genomes]
rs57582825	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57790663	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57924493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57992194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58091502	0.90[EUR][1000 genomes]
rs58790794	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59229348	0.83[AMR][1000 genomes]
rs59577817	1.00[ASN][1000 genomes]
rs59836627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59867122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59917473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60351212	0.92[AMR][1000 genomes]
rs60998226	0.90[EUR][1000 genomes]
rs61639754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495256	0.91[EUR][1000 genomes]
rs6495258	0.91[EUR][1000 genomes]
rs6495260	0.91[EUR][1000 genomes]
rs73455818	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455837	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455839	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455846	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467891	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467892	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467893	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74029439	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029440	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029442	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029451	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029452	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029464	0.90[EUR][1000 genomes]
rs8025910	0.91[EUR][1000 genomes]
rs8033909	0.90[EUR][1000 genomes]
rs9302280	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78173200-78185600	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:78173800-78186000	Enhancers	Fetal Muscle Leg	muscle
3	chr15:78179000-78185000	Enhancers	HSMMtube	muscle
4	chr15:78179000-78188400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:78179600-78185000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:78180000-78215600	Weak transcription	Right Atrium	heart
7	chr15:78180600-78185600	Weak transcription	Left Ventricle	heart
8	chr15:78180600-78188000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:78181400-78185200	Enhancers	Fetal Stomach	stomach
10	chr15:78182000-78185800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:78182000-78186000	Weak transcription	Fetal Heart	heart
12	chr15:78182000-78192800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:78182800-78185000	Enhancers	NHDF-Ad	bronchial
14	chr15:78183000-78185000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:78183400-78185000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:78183800-78185000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:78184000-78185000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:78184000-78185000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:78184000-78185800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:78184400-78188000	Weak transcription	HSMM	muscle
21	chr15:78184600-78185000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:78184600-78185800	Weak transcription	Fetal Brain Male	brain
23	chr15:78184800-78185000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:78184800-78185000	Enhancers	Gastric	stomach
25	chr15:78184800-78185800	Weak transcription	Placenta	Placenta
26	chr15:78184800-78185800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr15:78184800-78187400	Weak transcription	Adipose Nuclei	Adipose
28	chr15:78184800-78190000	Weak transcription	Spleen	Spleen

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