Variant report

Variant	rs73455818
Chromosome Location	chr15:78181522-78181523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs56945229	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57338257	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485870	0.90[EUR][1000 genomes]
rs57582825	1.00[EUR][1000 genomes]
rs57790663	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57924493	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57992194	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58091502	0.90[EUR][1000 genomes]
rs58790794	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59577817	1.00[ASN][1000 genomes]
rs59836627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59867122	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59917473	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60998226	0.90[EUR][1000 genomes]
rs61639754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495256	0.91[EUR][1000 genomes]
rs6495258	0.91[EUR][1000 genomes]
rs6495260	0.91[EUR][1000 genomes]
rs73455837	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455838	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455843	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455844	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455846	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467891	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467892	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467893	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74029439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029440	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029442	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029451	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029452	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029464	0.90[EUR][1000 genomes]
rs8025910	0.91[EUR][1000 genomes]
rs8033909	0.90[EUR][1000 genomes]
rs9302280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78173200-78185600	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:78173800-78186000	Enhancers	Fetal Muscle Leg	muscle
3	chr15:78178000-78181600	Weak transcription	Aorta	Aorta
4	chr15:78178000-78181600	Weak transcription	GM12878-XiMat	blood
5	chr15:78178000-78183400	Weak transcription	Spleen	Spleen
6	chr15:78178200-78181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:78178200-78182400	Weak transcription	Fetal Intestine Small	intestine
8	chr15:78178200-78183200	Weak transcription	Fetal Brain Male	brain
9	chr15:78179000-78182000	Enhancers	Hela-S3	cervix
10	chr15:78179000-78182200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:78179000-78185000	Enhancers	HSMMtube	muscle
12	chr15:78179000-78188400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:78179400-78182000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:78179400-78182200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:78179400-78184400	Enhancers	HSMM	muscle
16	chr15:78179600-78181600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:78179600-78181600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:78179600-78181800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:78179600-78182200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:78179600-78185000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:78179800-78181600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:78179800-78181600	Enhancers	NHEK	skin
23	chr15:78179800-78181800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:78179800-78183400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:78180000-78183400	Weak transcription	Right Ventricle	heart
26	chr15:78180000-78183800	Weak transcription	HMEC	breast
27	chr15:78180000-78215600	Weak transcription	Right Atrium	heart
28	chr15:78180600-78181800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:78180600-78185600	Weak transcription	Left Ventricle	heart
30	chr15:78180600-78188000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:78180800-78181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:78180800-78182800	Weak transcription	NHDF-Ad	bronchial
33	chr15:78180800-78183200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:78180800-78183200	Weak transcription	NH-A	brain
35	chr15:78180800-78183400	Weak transcription	NHLF	lung
36	chr15:78180800-78183600	Weak transcription	Adipose Nuclei	Adipose
37	chr15:78181200-78182200	Enhancers	Osteobl	bone
38	chr15:78181400-78181600	Enhancers	Primary B cells from peripheral blood	blood
39	chr15:78181400-78181600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:78181400-78181800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:78181400-78181800	Enhancers	Fetal Lung	lung
42	chr15:78181400-78182000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:78181400-78182000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:78181400-78182000	Enhancers	Fetal Heart	heart
45	chr15:78181400-78185200	Enhancers	Fetal Stomach	stomach

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