Variant report

Variant	rs56945826
Chromosome Location	chr12:10725861-10725862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11836564	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16915589	0.82[AFR][1000 genomes]
rs4763200	0.91[ASN][1000 genomes]
rs55643441	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986836	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369580	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59007580	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73056302	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73058205	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73058241	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73058246	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73058249	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062131	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062144	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062173	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062177	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062464	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062469	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309605	0.88[AFR][1000 genomes]
rs73252057	0.87[AFR][1000 genomes]
rs73254032	0.84[AFR][1000 genomes]
rs7963418	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972425	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898775	chr12:10668694-10735786	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1806801	chr12:10721485-10727408	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1813740	chr12:10721485-10727408	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10714000-10733200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:10724000-10733200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:10724000-10733400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:10724600-10726200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:10724800-10726800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:10725000-10726200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr12:10725000-10733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:10725200-10726200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:10725200-10732200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:10725400-10726200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:10725600-10732400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:10725600-10743600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:10725600-10765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:10725800-10726800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:10725800-10729600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:10725800-10732600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:10725800-10732600	Weak transcription	A549	lung
18	chr12:10725800-10733000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:10725800-10733200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:10725800-10733800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:10725800-10743200	Weak transcription	NHDF-Ad	bronchial
22	chr12:10725800-10753400	Weak transcription	Osteobl	bone
23	chr12:10725800-10761400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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