Variant report

Variant	rs569523538
Chromosome Location	chr9:104205360-104205361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104195600-104207200	Enhancers	HepG2	liver
2	chr9:104197000-104211400	Weak transcription	Right Atrium	heart
3	chr9:104197400-104209600	Enhancers	Fetal Intestine Large	intestine
4	chr9:104200800-104206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:104203200-104206400	Enhancers	Pancreas	Pancrea
6	chr9:104204600-104205800	Enhancers	Fetal Heart	heart
7	chr9:104204800-104205400	Weak transcription	Fetal Brain Male	brain
8	chr9:104204800-104205600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:104204800-104211400	Weak transcription	Left Ventricle	heart
10	chr9:104205000-104209600	Enhancers	Fetal Intestine Small	intestine
11	chr9:104205200-104205600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:104205200-104205600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:104205200-104205800	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr9:104205200-104205800	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr9:104205200-104206200	Flanking Active TSS	Liver	Liver
16	chr9:104205200-104206200	Enhancers	Stomach Mucosa	stomach
17	chr9:104205200-104206400	Enhancers	Brain Germinal Matrix	brain
18	chr9:104205200-104208000	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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